| Adénovirus CAV-1 | ADN | écouv. nasopharyngé | x | | | |
| Adenovirus CAV-2 | ADN | sang EDTA | x | | | |
| Anaplasma phagocytophilum | ADN | sang EDTA | x | | x | |
| Anaplasma spp. | ADN | sang EDTA | x | x | | |
| Babesia caballi | ADN | sang EDTA | | | x | |
| Babesia spp. | ADN | sang EDTA | x | x | x | |
| Bartonella spp. | ADN | sang EDTA | x | x | | |
| Bordetella bronchiseptica | ADN | écouv. oropharyngé | x | x | x | |
| Bornavirus | ARN | sang/LCR | x | x | x | |
| Borrelia burgdorferi sl | ADN | sang EDTA | x | x | x | |
| Brucella spp. | ADN | sang EDTA | x | x | x | |
| Calicivirus | ARN | sang EDTA, écouv. oropharyngé | | x | | |
| Chlamydia spp. | ADN | écouv. oculaire | | x | | |
| Chlamydophila abortus | ADN | écouv. vaginal | | | x | |
| Chlamydophila psittaci | ADN | écouv. oculaire/oropharyngé/rectal | | | | x |
| Clostridium perfringens | ADN | écouv. rectal | x | x | x | |
| Coronavirus canin | ARN | écouv. rectal | x | | | |
| Coxiella burnetii | ADN | sang EDTA | | | x | |
| Cryptosporidium spp. | ADN | écouv. rectal | x | x | | |
| Ctenocephalides spp. | ADN | raclage peau | x | x | x | |
| Demodex | ADN | raclage peau | x | x | | |
| Ehrlichia canis | ADN | sang EDTA | x | x | x | |
| Ehrlichia spp. | ADN | sang EDTA | x | | | |
| ETEC | ADN | sang EDTA | x | x | x | |
| FCoV | ARN | sang EDTA | | x | | |
| FeLV | ARN | sang EDTA | | x | | |
| FIV | ARN | sang EDTA | | x | | |
| Giardia intestinalis | ADN | écouv. rectal | x | x | | |
| Herpès virus canin | ADN | écouv. oropharyngé | x | | | |
| Herpès virus équin 1 | ADN | écouv. nasopharyngé | | | x | |
| Herpès virus équin 4 | ADN | écouv. nasopharyngé | | | x | |
| Herpès virus felin | ADN | écouv. oculaire/oropharyngé/vaginal | | x | | |
| IBV (Virus de la bronchite infectieuse) | ARN | écouv. trachéal/organes | | | | x |
| Influenza type A | ARN | écouv. oropharyngé | x | x | x | x |
| Klebsiella pneumoniae | ADN | urine/LBA | x | x | x | |
| Leishmania infantum | ADN | sang EDTA | x | x | | |
| Leishmania spp. | ADN | sang EDTA | x | | | |
| Leptospira spp. | ADN | sang EDTA | x | | | |
| Maladie de Carré | ARN | écouv. conjonctival | x | | | |
| Maladie de Marek (Gallid herpesvirus 2) | ADN | sang EDTA/plumes/organes | | | | x |
| Maladie de Newcastle | ARN | écouv. trachéal/organes | | | | x |
| Malassezia pachydermatis | ADN | raclage peau | x | x | | |
| Mycoplasma felis | ADN | écouv. oculaire | | x | | |
| Mycoplasma haemofelis/canis | ADN | sang EDTA | x | x | | |
| Mycoplasma spp. | ADN | urine/sang/salive... | x | x | | |
| Neospora caninum | ADN | LCS/organes/placenta | x | | x | |
| Parainfluenza canin | ARN | LBA | x | | | |
| Parvovirus canin | ADN | écouv. rectal | x | | | |
| Parvovirus félin | ADN | écouv. rectal | | x | | |
| Pseudomonas aeruginosa | ADN | | | | x | |
| Rickettsia spp. | ADN | sang EDTA | x | x | x | |
| Salmonella enteritidis | ADN | écouv.rectal | x | x | | |
| Salmonella spp. | ADN | écouv. rectal | x | x | | x |
| SARS-COV-2 | ARN | écouv. oculaire | | x | | |
| Theileria equi | ADN | sang EDTA | | | x | |
| Theileria spp. | ADN | sang EDTA | x | x | x | |
| Toxoplasma gondii | ADN | sang EDTA | x | x | x | |
| Tritrichomonas fœtus | ADN | écouv. rectal | | x | | |
| Virus de l'Artérite Virale | ARN | sang EDTA | | | x | |
| Virus Minute | ADN | sperme/écouv. vaginal ou rectal | x | | | |
| West Nile Virus | ARN | sang EDTA | | | | x |
